Product Documentation
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  • Welcome to Biodock
  • Why Biodock
  • Quickstart
    • Start here (choose a tutorial)
    • Path 1: AI-assisted analysis
    • Path 2: Train a fully-automated AI model
      • Set up your project
      • Label and train
      • Labeling shortcuts
      • Run your AI model
      • Configuring your model
  • AI Projects
    • Project settings
    • Sharing your AI project
    • Training a model
  • AI Analysis
    • Results dashboard overview
    • Download results and reports
    • Correcting results to improve your model
    • Editing objects (QC)
    • Filters (like flow cytometry)
  • Biodock Scripts
    • Biodock Platform Script Guidelines
  • Files
    • Uploading images
    • AWS S3 integration
    • View and manage data
      • Viewing images
      • File details and download
      • Copy, cut, move
      • Sharing data
      • Merging channels
    • Supported image types
  • Public API (Beta)
    • Overview
    • Authentication
    • Examples
    • Resources
      • Files
      • Analysis Jobs
      • Pipelines
    • Limitations
  • Deep AI models
    • Evaluating Performance
  • User
    • Account registration
    • Change password, login, logout
    • Usage limits and team
      • Filesize based limits
      • Run credits limits
    • Billing
  • Company
    • Academics and startups
    • Contact us
    • Citing Biodock
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On this page
  • 1. Create a Project
  • 2. Upload Data
  • 3. Configure your project
  • Overview
  1. Quickstart
  2. Path 2: Train a fully-automated AI model

Set up your project

PreviousPath 2: Train a fully-automated AI modelNextLabel and train

Last updated 10 months ago

Time estimate: 4 minutes work, 3 minutes wait

1. Create a Project

To start, navigate to and follow these steps:

Click on AI Projects from the sidebar, and click on Create a new project. Enter a helpful project name and description, and then click Create to finalize your project.

2. Upload Data

Once your project is created, it's time to import your images. Either upload files or choose from already uploaded files in Biodock.

Upload files options

  • Upload from your computer.

  • Import from Google Drive, Box, Dropbox, or OneDrive.

Choose from files

Click on Select Files. Choose the desired files from the list. Click Import to add them to your project. Wait for the import to finish and finish processing your files.

3. Configure your project

First, enter the model creation dashboard by clicking on Create or improve AI models. Follow the instructions to create your first size group. You'll choose a segmentation type, choose a tile size, and add your first class.

Choosing a tile size

Overview

The labeling tab has tools on the left side, your zoomable image in the center, and a tutorial on the right. If you follow the tutorial, it will guide you step by step to a great performing AI model in most cases.

Continue to the next page!

If you have images with more than 3 channels, you will need to before you can proceed. You should also do this configuration if any of your channels are too dim.

Biodock creates a grid-like set of tiles for labeling and training. Box around the object to select proper tile size. It's very important to follow the on-screen instructions to choose your tiles size correctly. Smaller tile sizes use more .

configure channel settings
credits
app.biodock.ai